Browse of TCMCG016C27883 protein

CDS

Accession Number	TCMCG016C27883
gbkey	CDS
Protein Id	OMO51868.1
Location	complement(join(58351..58458,58554..58637,58723..58953,59034..59189,59290..59386,60027..60203,60294..60664,60932..61030,61492..61675,61770..61915,62447..62507,63278..63902,64048..64183,64307..64381,64536..64689,64965..65065,65147..65227,65405..65553,65708..65876,66765..66866,66971..67045,67150..67230,67388..67494,68651..68716,68802..68936,69176..69288,70144..70280,71100..71174,71272..71457,71643..71720,71851..71964,72568..72660,73443..73514,73638..73760,73861..73979,75604..75694,76851..77024,77217..77357,77930..78138,78332..78503))
Organism	Corchorus capsularis
locus_tag	CCACVL1_29542

Protein

Length	1888aa
Molecule type	protein
Topology	linear
Data_file_division	PLN
dblink	BioProject:PRJNA215142; BioSample:SAMN03290679;
db_source	AWWV01015668.1
Definition	hypothetical protein CCACVL1_29542 [Corchorus capsularis]
Locus_tag	CCACVL1_29542

EGGNOG-MAPPER Annotation

COG_category	A
Description	Protein RRP5 homolog
KEGG_TC	-
KEGG_Module	-
KEGG_Reaction	-
KEGG_rclass	-
BRITE	ko00000        [VIEW IN KEGG] ko03009        [VIEW IN KEGG]
KEGG_ko	ko:K14792        [VIEW IN KEGG]
EC	-
KEGG_Pathway	-
GOs	GO:0000460        [VIEW IN EMBL-EBI] GO:0000462        [VIEW IN EMBL-EBI] GO:0000466        [VIEW IN EMBL-EBI] GO:0003674        [VIEW IN EMBL-EBI] GO:0005488        [VIEW IN EMBL-EBI] GO:0005515        [VIEW IN EMBL-EBI] GO:0005575        [VIEW IN EMBL-EBI] GO:0005622        [VIEW IN EMBL-EBI] GO:0005623        [VIEW IN EMBL-EBI] GO:0005634        [VIEW IN EMBL-EBI] GO:0005654        [VIEW IN EMBL-EBI] GO:0005730        [VIEW IN EMBL-EBI] GO:0006139        [VIEW IN EMBL-EBI] GO:0006364        [VIEW IN EMBL-EBI] GO:0006396        [VIEW IN EMBL-EBI] GO:0006725        [VIEW IN EMBL-EBI] GO:0006807        [VIEW IN EMBL-EBI] GO:0008134        [VIEW IN EMBL-EBI] GO:0008150        [VIEW IN EMBL-EBI] GO:0008152        [VIEW IN EMBL-EBI] GO:0009987        [VIEW IN EMBL-EBI] GO:0010467        [VIEW IN EMBL-EBI] GO:0016070        [VIEW IN EMBL-EBI] GO:0016072        [VIEW IN EMBL-EBI] GO:0022613        [VIEW IN EMBL-EBI] GO:0030490        [VIEW IN EMBL-EBI] GO:0030684        [VIEW IN EMBL-EBI] GO:0031974        [VIEW IN EMBL-EBI] GO:0031981        [VIEW IN EMBL-EBI] GO:0032040        [VIEW IN EMBL-EBI] GO:0032991        [VIEW IN EMBL-EBI] GO:0034470        [VIEW IN EMBL-EBI] GO:0034641        [VIEW IN EMBL-EBI] GO:0034660        [VIEW IN EMBL-EBI] GO:0042254        [VIEW IN EMBL-EBI] GO:0042274        [VIEW IN EMBL-EBI] GO:0043170        [VIEW IN EMBL-EBI] GO:0043226        [VIEW IN EMBL-EBI] GO:0043227        [VIEW IN EMBL-EBI] GO:0043228        [VIEW IN EMBL-EBI] GO:0043229        [VIEW IN EMBL-EBI] GO:0043231        [VIEW IN EMBL-EBI] GO:0043232        [VIEW IN EMBL-EBI] GO:0043233        [VIEW IN EMBL-EBI] GO:0044085        [VIEW IN EMBL-EBI] GO:0044237        [VIEW IN EMBL-EBI] GO:0044238        [VIEW IN EMBL-EBI] GO:0044422        [VIEW IN EMBL-EBI] GO:0044424        [VIEW IN EMBL-EBI] GO:0044428        [VIEW IN EMBL-EBI] GO:0044446        [VIEW IN EMBL-EBI] GO:0044464        [VIEW IN EMBL-EBI] GO:0046483        [VIEW IN EMBL-EBI] GO:0070013        [VIEW IN EMBL-EBI] GO:0071704        [VIEW IN EMBL-EBI] GO:0071840        [VIEW IN EMBL-EBI] GO:0090304        [VIEW IN EMBL-EBI] GO:1901360        [VIEW IN EMBL-EBI] GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:   ATGGCGGCAGCGTCTTCCAAGAAACCTCAGAAGAAAAAATCCAATGAAGGGAAACCAAAGTTCAATAAATCGTCCAAGAAACAGTTTAAAACGAAGAAGAATCCGAACGACGCCGTGAAGTCTGACGCTGTTGCTTTGCAGCTAGAAGACGATGTCCCTGACTTCCCTAGAGGTGGGGGTAGTTCTTTGAGCAAACAGGAACGTGATGAAATCCGAGCTGAAGTAGATGCCGAATTCGAGGCAGAAGAGCGGGCATCAAAGAAGAATAGGAGGAATAAGTTGCAGAAGAAGAGCCAGGTCATGCCAGATGACTTTGGTTCACTTTTTGGGGATGGCATTACGGGCAAGCTACCTAAATACGCCAACAAAATAACATTGAAGAATATTTCTCCTGGAATGAAGCTCTGGGGAGTTGTTGCCGAAGTAAATGAGAAGGACCTTGTAATTAGCCTTCCAGGGGGATTACGTGGTTTAGTTCGAGCAGCTGATGCTCTCGATTCTGTCCTCGCTGATGAAGTTGAGAATAATGAAGGAAATTTCCTTGCAAATATATTCTACACCGGACAGCTGGTTTCGTGCATTGTGCTGCAGTTGGATGATGATAAGAAGGAGACTGGCAAAAGAAGGATATGGCTTTCCTTGCGTCTCTCTTTGTTGCACAAAGGCGTCTCCTTGGATGCTGTTCAAGAAGGGATGGTACTTACTGGAAATGTGAAAAGCATTGAAGATCATGGATACATTCTTCACTTTGGGTTGTCTTCATTCACGGGGTTTTTACCAAAAGATGAAAGCAGGGACATTGAAGTGAGGGCCGGGCAGCTTGTACAAGGGGTTGTTAGGCGTATTGATAAAACTCGCAAAGTTGTTTATTTCAGTTCCGACTCAGATACCGTGTCTAAATGTGTAACCAAGGATCTTAAGGGCATTTCAATTGATCTTCTTATTCCTGGCATGTTGGTCAATGCTTCCGTGCGATCCACCCTTGAGAATGGGATATTATTATCATTCCTCACATACTTTACTGGAACAGTTGATATGTTTCATTTACAAAATAAATTCCCAACTAAGGACTGGAAGGATGATTACAATCAAAATAGAAAGGTTAATGCTCGGATATTATTTATTGATCCCTCAACCAGAGCAGTTGGCTTGACCCTAAATCCTCATCTTGTTCATAATAAAGCGCCTCCTTCGCATGTCAACATTGGAGAGATTTATGACCAGTCAAAAGTGATCAGGGTTGATAGAGGCTTAGGCCTTCTGTTAGACATCCCTTCTAAACCAGTATCAACTCCAGCCTATGTGAATTTCAAGGAAGGCAGCCAAGTTCGTGTTCGGATTCTTGGGTTTAGGCAGTTGGAAGGGCTTGCCACTGGTATTTTAAAGGCCAGCGCATTTGAAGGGCCAGTGTTCACTCATGCAGATGTGAAGCCTGGGATGGTTGTAAGAGCTAAAGTCATTGCTCTTGACAGCTTCGGTGCCATTGTGCAATTTCCTGGTGGTGTGAAGGCACTATGTCCCACTCGTCATATGTCTGAATTTGAAATTGCAAAACCCGGAAAGAAGTTTAAGGTTGGAGCTGAATTAGTCTTCCGGGTACTAGGTTGCAAGTCCAAGAGAATAACTGTCACTCACAAGAAAACTCTAGTGAAATCAAAACTTGGTATTATTAGTTCTTATGCTGATGCAACTGAGGGACTAATAATGCATGGATGGATAACTAAGATTGAAAAGCATGGATGCTTTGTGCGGTTCTACAGTGGGGTCCAAGGATTTGCACCCAGATTTGAACTTGGCTTGGGACCCGGAGATGATCCAAGTTCAATGTATCATGTGGGACAAGTTGTTAAATGTAGAGTAATCGGTTCTAGCGCTGCTTCACGGCGTATCAATCTTAATGATATGGTTAAGTTGGGCAGTGTTGTTTCAGGAGTTGTTGATGGGATTACCCCATCTGCGGTAGTTATACAGGTTAACTCCAAAGCTCACTTGAAGGGCACAATATCTAATGAACATTTGGCAGATCATCATGAGAGTGCTGCCTTGTTGAAGTCAGTCCTGAAGCCTGGATATAAGTTTGACCAGCTGCTGGTTCTAGATATTGAGGGCAACAACATTTTGCTCTCTGCGAAATATTCTCTCATAAATTCGGCTGAACAACTACCTTCTGATATCAGTCAGATCCGCCCTAACTCAGTGGTTCACGGCTATGTTTGTAATTTAATTGAAACTGGCTGCTTTGTCCGCTTTCTTGGGCGTTTAACCGGTTTCTCACCTAGGAGCAAGGCAACGGATGACAATAGAGCTGATCTCTCAGAGGCCTTTTATGTGGGTCAATCTGTTCGGAGTAATATACTCGATGTAAATAGTGAAACAGCAAGAATAACACTTTCTTTGAAGCAGTCATCTTGTTCTTCGACCGATGCATCCTTTATCCAAGAATACTTTCTTTTGGAAGAGAAGATTGCTAAGCTACAATCATCAGAATCTGATGGATCTGAGTTGAAGTGGGTCGAAGCCTTTACTGTTGGCAGTGTCATTGAGGGAAAAATTGGGGAGGCAAAGGATATTGGAGTGGTTGTTAGCTTTGACAAATACAACGATGTTTTAGGCTTTATCACACATCATCAATTAGGTGAACATACTTTGGAAACAGGAACTATTGTTCAAGCTGCAGTACTTGATGTGGCCAAGGCAGAACGCCTTGTTGATTTATCCTTAAAACCAGAGTTTGTTGATAAATCTCGAGAGGAAGGTTCCAAAGGCAAAACTCACAAGAAGCGCAAAAGAGAAGCTTCCAATGACTTGGAGGTGCACCAGACAGTCAATGCAGTTGTGGAGATTGTGAAAGAGAATTACTTGGTTCTTGCAATTCCAGAGCATAACCATTCAATAGGTTACGCATCAATAGCAGATTATAATACACAGAAGTTTCCTCAGAAACATTTTGTGAATGGACAGAGGGTTATTGCTACTGTTATGGCCCTTCCAAGCCATGCAACTTCAGGGAGGTTGCTTTTGCTCCTTAATTCTATTAGCGAGGTTACTGACACATCCAGTTCGAAAAGGGCCAAAAAGAAGTCTAGTTACAATGTGGGATCCTTGGTTTCTGCAGAGGTTACTGAAATAATGCCACTTGAATTGAGATTGAAATTTGGAATTGGTTTCCGTGGACGGGTTCATATCACAGAGGTTAATGATGATAATGTTCTCGAAAATCCATTTGCAAACTTCAAAATTGGGCAGACAATCACAGCAAAGATTGTGGGGAAGGCAAATCAGAAAGGACATTTATGGGATTTATCTGTCAAACCTACAATGCTTGCTGGTGACTCCACAATGGATGAATTTCATTTTTCAACTGGACAACTTGTCACTGGTTATGTCTACAAAGTAGACGCTGAATGGGCCTGGCTAACCATATCCCGTAATGTGAAAGCTCAGCTATATATTCTTGATAGTGCATGTGAACCTGATGAGCTGCAGCATTTCCAGGAGCACTTCAAAATTGGGAAAGCTGTTTCGGGTCATGTTTTAAATATTAACAAGGACAAAAAGCTTTTACGTTTAGTGCGACATCCGCTAGGTGTTCTTTCTACTGATGGTGAAAGTAAAAAGACAGGTGACTCAGATAATAACATTTCAGATGAAAGTGTTACAGGTCATATTCATGAAGGAGATATTTTGGGTGGAAGAATTTCCAAAATACTTCCCGGTGTAGGTGGATTGGTTGTCCAAATAGGTCCTCACACTTATGGTAGGGTTCATTTTGCCGAACTGAAGGACAAATGGGAATCTGACCCATTATCTGGATATAGTGAGGGGCAATTTGTTAAGTGCAAGGTCCTAGAAATCAGCCATTCGTGCAAGGGCACTATTCACATTGATTTATCATTACGCTCTTCTTTGGACGGCATGCTTCCCAAGAATCCTTCAGAAATCTGCAGCGACTTGGACTCTTCAACCAATCGTGCTGAAAGAATTGAGGATCTATATCCCAATATGGCTGTGCAGGGTTATGTTAAAAACATTACCCCAAAAGGTTGCTTTATCCTGCTTTCAAGGAAGGTAGATGCAAAAATTCTCCTGTCAAATTTATCTGATGGATATATTGATGACCCTATAAAGGAATTCCCCATTGGAAAGCTCGTAGTTGGAAGGGTATTAGCAGTAGAGCCTTTGTCAAAGCGAGTTGAAGTCACCTTAAAACAATCAAATAGTAAGGGTGCATCAAAATCTGAAGTTAATGATTTTAGTAGCCTGCATGTTGGAGATATAGTTTCAGGCAGAATCAGGCGTGTGGAGTCGTATGGTGTGTTTATCGCACTTGACCATACAAACATGGTTGGACTGTGCCATGTCTCAGAGCTTTCAGATGATCGTGTTGAGAACATCCAAACAAAATATGGAGTAGGAGAGAAGGTTACAGCAAAGATATTAAAGTTGGATGAGGAAAGACACCGGATCTCACTTGGTATGAAAAGTTCATATCTTACTGAAGATATTGATAACCAACTACCTTCAGAAGAAGAGTCTGAAGACGACACCGAAGAAAATGGTGTCATGGATGAGACAAGATCACTATTATTGACTGACAGCACTCTTGGGATGGATATTGAGTATGAAAATGGACCAAGCTCTGTTCTTGCCCAAGCAGAATCAAGAGCTTCAATTCCTCCACTTGAGGTCACTCTTGATGACATTGAGCACTCTGACTTGGATATATTAGCCAGTCAAAATCAAGCAAGTAATGACGCAGTCGACATGGATGAGAAGAGTACGAGACGGGCTAAGAAGAAAGCAAAGGAGGATAGGGAGCGGGAAATAAGAGCTGCTGAGGAGAGACAATTAGAGAAGGATGTTCCAAGAACTGCTGATGAATTTGAGAAACTTGTTAGAAGTTCCCCTAATAGCAGTTTTGTCTGGATAAAATACATGGCTTTCATGCTCAATTCAGCTGATATTGAGAAAGCCCGTGCTATTGCTGAAAGGGCTTTGAGGACAATAAATATTCGAGAAGAGAATGAGAAGTTGAATATATGGGTGGCTTACTTCAATCTGGAGAATCAATATGGGAATCCTCCCGAGGAAGCTGTGCAAAAGGTATTTCAAAGGGCATTGCAGTATTGTGATCCAAAAAAGGTACATTTAGCACTTTTGGGCATGTATGAGAGAACAGAGCAGCATAAATTGGCCGATGAACTACTTGACAAAATGACCAAGAAGTTTAAGCACTCTTGCAAGATTTGGTTGAGGCGGGTGCAGATGCTGTTGATGCAACAGCAGGATGGGATTCAATCTGTTGTAAACCGTGCCCTAATATGCCTTCCACGCCATAAGCATATTAAGTTTATTTCACAGACAGCCATACTTGAGTTCAAATCTGGGGTACCTGATAGGGCGAGATCTATGTTTGAGGGAATTTTAAGGGAGTACCCAAAGAGAACAGATTTGTGGAGCATCTACCTTGATCAAGAGATTCGGCTTGGGGACGAGGATGTGATTCGTGCTCTATTTGAGAGGGCAATTAGCTTGAGCTTACCACCCAAAAAAATGAAATTCTTATTCAAGAAGTATCTCGATTATGAGAAATCTCTTGGTGACGAGGAAAGAATTGAATCTGTTAAACAAAAGGCGATGAATTACGTTGAAAGTACACTAACTTGA

Protein:   MAAASSKKPQKKKSNEGKPKFNKSSKKQFKTKKNPNDAVKSDAVALQLEDDVPDFPRGGGSSLSKQERDEIRAEVDAEFEAEERASKKNRRNKLQKKSQVMPDDFGSLFGDGITGKLPKYANKITLKNISPGMKLWGVVAEVNEKDLVISLPGGLRGLVRAADALDSVLADEVENNEGNFLANIFYTGQLVSCIVLQLDDDKKETGKRRIWLSLRLSLLHKGVSLDAVQEGMVLTGNVKSIEDHGYILHFGLSSFTGFLPKDESRDIEVRAGQLVQGVVRRIDKTRKVVYFSSDSDTVSKCVTKDLKGISIDLLIPGMLVNASVRSTLENGILLSFLTYFTGTVDMFHLQNKFPTKDWKDDYNQNRKVNARILFIDPSTRAVGLTLNPHLVHNKAPPSHVNIGEIYDQSKVIRVDRGLGLLLDIPSKPVSTPAYVNFKEGSQVRVRILGFRQLEGLATGILKASAFEGPVFTHADVKPGMVVRAKVIALDSFGAIVQFPGGVKALCPTRHMSEFEIAKPGKKFKVGAELVFRVLGCKSKRITVTHKKTLVKSKLGIISSYADATEGLIMHGWITKIEKHGCFVRFYSGVQGFAPRFELGLGPGDDPSSMYHVGQVVKCRVIGSSAASRRINLNDMVKLGSVVSGVVDGITPSAVVIQVNSKAHLKGTISNEHLADHHESAALLKSVLKPGYKFDQLLVLDIEGNNILLSAKYSLINSAEQLPSDISQIRPNSVVHGYVCNLIETGCFVRFLGRLTGFSPRSKATDDNRADLSEAFYVGQSVRSNILDVNSETARITLSLKQSSCSSTDASFIQEYFLLEEKIAKLQSSESDGSELKWVEAFTVGSVIEGKIGEAKDIGVVVSFDKYNDVLGFITHHQLGEHTLETGTIVQAAVLDVAKAERLVDLSLKPEFVDKSREEGSKGKTHKKRKREASNDLEVHQTVNAVVEIVKENYLVLAIPEHNHSIGYASIADYNTQKFPQKHFVNGQRVIATVMALPSHATSGRLLLLLNSISEVTDTSSSKRAKKKSSYNVGSLVSAEVTEIMPLELRLKFGIGFRGRVHITEVNDDNVLENPFANFKIGQTITAKIVGKANQKGHLWDLSVKPTMLAGDSTMDEFHFSTGQLVTGYVYKVDAEWAWLTISRNVKAQLYILDSACEPDELQHFQEHFKIGKAVSGHVLNINKDKKLLRLVRHPLGVLSTDGESKKTGDSDNNISDESVTGHIHEGDILGGRISKILPGVGGLVVQIGPHTYGRVHFAELKDKWESDPLSGYSEGQFVKCKVLEISHSCKGTIHIDLSLRSSLDGMLPKNPSEICSDLDSSTNRAERIEDLYPNMAVQGYVKNITPKGCFILLSRKVDAKILLSNLSDGYIDDPIKEFPIGKLVVGRVLAVEPLSKRVEVTLKQSNSKGASKSEVNDFSSLHVGDIVSGRIRRVESYGVFIALDHTNMVGLCHVSELSDDRVENIQTKYGVGEKVTAKILKLDEERHRISLGMKSSYLTEDIDNQLPSEEESEDDTEENGVMDETRSLLLTDSTLGMDIEYENGPSSVLAQAESRASIPPLEVTLDDIEHSDLDILASQNQASNDAVDMDEKSTRRAKKKAKEDREREIRAAEERQLEKDVPRTADEFEKLVRSSPNSSFVWIKYMAFMLNSADIEKARAIAERALRTINIREENEKLNIWVAYFNLENQYGNPPEEAVQKVFQRALQYCDPKKVHLALLGMYERTEQHKLADELLDKMTKKFKHSCKIWLRRVQMLLMQQQDGIQSVVNRALICLPRHKHIKFISQTAILEFKSGVPDRARSMFEGILREYPKRTDLWSIYLDQEIRLGDEDVIRALFERAISLSLPPKKMKFLFKKYLDYEKSLGDEERIESVKQKAMNYVESTLT